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WRF Installation on NTNU-HPCS (cschang @ Sep. 2017)

1. Installation

1.1 Compiler & MPI:

In :~/.bash_profile":

source /opt/intel/compilers_and_libraries_2017/linux/bin/compilervars.sh intel64
export PATH=/opt/openmpi-1.10.5-intel17/bin:$PATH
export LD_LIBRARY_PATH=/opt/openmpi-1.10.5-intel17/lib:$LD_LIBRARY_PATH
export LD_RUN_PATH=/opt/openmpi-1.10.5-intel17/lib:$LD_RUN_PATH

($ mpirun -V )

1.2 Building hdf-1.10.1 (parallel version; to support netCDF4 & pnetCDF)

download hdf5 from https://support.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.10.1.tar
( echo $CC $CXX $FC $F90 )
(Note: suggest to check which version with "mpicc", "mpicxx", "mpif90" )

(Note: when use openmpi with ifort, just only has "mpicxx", no "mpiicpc ")

export CC=mpicc
export CXX=mpicxx
export FC=mpif90
export F90=mpif90

( echo $CC $CXX $FC $F77 $F90 )

./configure --prefix=/home/cschang/software_cschang/hdf5-1.10.1_ifort-17.0.1_openmpi-1.10.5/ --enable-parallel --enable-shared --enable-static --enable-fortran

(check config.status)

make -j 12 install

# after install, to check:

$cat /home/cschang/software_cschang/hdf5-1.10.1_ifort-17.0.1_openmpi-1.10.5/lib/libhdf5.settings

$ldd /home/cschang/software_cschang/hdf5-1.10.1_ifort-17.0.1_openmpi-1.10.5/bin/xxxxxx

1.3 Building parallel-netcdf (pnetcdf)

download pnetcdf from http://trac.mcs.anl.gov/projects/parallel-netcdf

(same as $1.2; echo $CC $CXX $FC $F77 $F90 )

export CC=mpicc
export CXX=mpicxx
export FC=mpif90
export F90=mpif90

export OMPI_MPICC=icc
export OMPI_MPICXX=icpc
export OMPI_MPIFC=ifort
export OMPI_MPIF77=ifort
export OMPI_MPIF90=ifort

( echo $OMPI_MPICC $OMPI_MPICXX $OMPI_MPIFC $OMPI_MPIF77 $OMPI_MPIF90 )

export CFLAGS="-g -O2 -fPIC"
export CXXFLAGS="-g -O2 -fPIC"
export FFLAGS="-g -fPIC"
export FCFLAGS="-g -fPIC"
export FLDFLAGS="-fPIC"
export F90LDFLAGS="-fPIC"
export LDFLAGS="-fPIC"

("-fPIC" needs by shared library)

( echo $CFLAGS $CXXFLAGS $FFLAGS $FCFLAGS $FLDFLAGS $F90LDFLAGS $LDFLAGS )

./configure --prefix=/home/cschang/software_cschang/pnetCDF-1.8.1_intel-17.0.1_openmpi-1.10.5/ --enable-fortran --enable-large-file-test
make -j 16 install
(make check --> check squential programs)
(make ptest --> check parallel programs)

# after install, to check:

$ldd /home/cschang/software_cschang/pnetCDF-1.8.1_intel-17.0.1_openmpi-1.10.5/bin/xxxxxx

1.4 Building netcdf-C & netcdf-fortran

#netcdf-C:

download netcdf-C from ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.1.tar.gz (only use this version)
download netcdf-fortran from ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.4.3.tar.gz

export  CC=mpicc
export CXX=mpicxx   
export  FC=mpif90
export F90=mpif90

export  OMPI_MPICC=icc 
export OMPI_MPICXX=icpc 
export  OMPI_MPIFC=ifort 
export OMPI_MPIF77=ifort 
export OMPI_MPIF90=ifort

(same as $1.2; $ echo $CC $CXX $FC $F77 $F90 )

export HDF5=/home/cschang/software_cschang/hdf5-1.10.1_ifort-17.0.1_openmpi-1.10.5
export PNET=/home/cschang/software_cschang/pnetCDF-1.8.1_intel-17.0.1_openmpi-1.10.5

export CFLAGS="-I$HDF5/include -I$PNET/include"
export CXXFLAGS="-I$HDF5/include -I$PNET/include"
export CPPFLAGS="-I$HDF5/include -I$PNET/include"
export FFLAGS="-I$HDF5/include -I$PNET/include"
export FCFLAGS="-I$HDF5/include -I$PNET/include"
export LDFLAGS="-I$HDF5/include -I$PNET/include -L$HDF5/lib -L$PNET/lib"

( echo $CFLAGS $CXXFLAGS $CPPFLAGS $FCFLAGS $FFLAGS $LDFLAGS )

./configure --prefix=/home/cschang/software_cschang/netcdf-4.4.x_intel-17.0.1_openmpi-1.10.5 --enable-fortran --disable-static --enable-shared --with-pic --enable-parallel-tests --enable-pnetcdf --enable-large-file-tests --enable-largefile --disable-dap --enable-netcdf4
make
make check
make install

(check: ..../lib/libnetcdgf.settings --> PNetCDF Support: yes)

#netcdf-fortran:

export NCDIR=/home/cschang/software_cschang/netcdf-4.4.x_intel-17.0.1_openmpi-1.10.5
export LD_LIBRARY_PATH=${NCDIR}/lib:$LD_LIBRARY_PATH

export CFLAGS="-I$HDF5/include -I$NCDIR/include"
export CXXFLAGS="-I$HDF5/include -I$NCDIR/include"
export CPPFLAGS="-I$HDF5/include -I$NCDIR/include"
export FFLAGS="-I$HDF5/include -I$NCDIR/include"
export FCFLAGS="-I$HDF5/include -I$NCDIR/include"
export LDFLAGS="-I$HDF5/include -I$NCDIR/include -L$HDF5/lib -L$NCDIR/lib"

( echo $CFLAGS $CXXFLAGS $CPPFLAGS $FCFLAGS $FFLAGS $LDFLAGS )

./configure --prefix=$NCDIR --disable-static --enable-shared --with-pic --enable-parallel-tests --enable-large-file-tests --enable-largefile
make
make install
Note: You can use script "nf-config" to find out the relevant compiler options to build your application. Enter

#set environment variables for pnetcdf & NETCDF:

1.5 Building extra libraries for "grib2" (JasPer + libpng + zlib)

#JasPer:

ref: "WRF user Guide"

天曉得

2018年8月16日星期四

2017年9月29日星期五

2018年8月16日 星期四

2017年9月29日 星期五

2018年8月16日星期四

2017年9月29日星期五